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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015904102.1_cds_XP_016454253.1_48300
CDS Infomation

[gene=LOC107778498] [db_xref=GeneID:107778498] [protein=probable polygalacturonase At1g80170] [protein_id=XP_016454253.1] [location=complement(join(32094..32372,32896..33012,33176..33284,33354..33435,33980..34187,34319..34339,34428..34598,34684..34815,35319..35564))] [gbkey=CDS]
Sequence

ATGGGGAAGATGAGATCTTCCTCCATCTCTTACTTTAATTTCTCGTCTTATTCCACCTCC
GTCGCACTCTTCGCATCGCTATACAGTATCTATTTCGTCTTGATTTCAGCAAATGTGAAT
GGGTTTGATTCAGTGATACAGCTCCCTACATCTGCGTCTGTGAGGAACACAACCCGCAAA
TCAGAAACCCTTTTTGATGTCGGTGACTTTGGAGCAATTGGAGATGGCATCACCGACGAC
ACTAATTCTTTTAAAGATGCTTGGGACAAGGCCTGCTCTTCAGCATCACGATCGAAAATT
GTCATCCCTGGCGGATATTCTTTCTTAGTTCGGCCACTTAATTTTGCTGGTCCTTGCCGG
TCAAAGGTGTCTTTAAGGATTGCAGGTACTATTCTAGCGCCTAAGGATCTTGAAGTCTGG
GATGGCTTGAATCCACGAAAATGGCTCTATTTCCGTAGTATGAAACACCTGACAATAGAA
GGAGGAGGAACTATAAATGGTATGGGCCAGGAGTGGTGGGCTCGGTCATGCAAGGTCAAC
AAAACAAATCCGTGTCAACATGCTCCAACGGCTTTAACTTTCCATAGATGCAACAACCTG
AAAGTCAGGAACATAGAGATCCTTAATAGTCAACAAATGCATTTAGCATTTACTGATTGC
AAACATGTTGCAGTATCACATCTCGCAGTCTTAGCCCCAGCTGATAGCCCTAATACCGAT
GGAATCCACATAAGTTCATCTACACAGATCAATATCAAGGATTGCACTATTGGCACAGGA
GATGACTGCATATCTATTGTCGGCAATTCATCACGGATCAAAGTTAGAAACATTGTGTGT
GGGCCAGGCCATGGTATAAGCATTGGAAGCTTGGGAAAGTCCAATTCAATGTCTCAAGTT
TACAATGTTCATGTTAATGGAGCATCTATTTCCAACACGGAGAACGGTGTTAGAATAAAG
ACTTGGCAGGGAGGTACCGGGTTTGTCAGAAAGATTACTTTCGAGAGTGTTTGGATGGAA
AATGTCTCAAATCCTATCATAATAGACCAATATTACTGTGATTCTCTGCTGCCCTGTTCA
AACAAGACTTCAAACATTCGCATTGACAGCATATCCTTCGTGGGTATTAAGGGAACTTCA
GCTACAGAAAAGGCAATAACAGTTGCCTGCAGCGATAGCTGCCCCTGTAGAAAGTTGTAC
TTGGAAGATGTTCAACTAACTTCATTTTCTGGGGATCCGATAACATCATTTTGCTGGGAG
GCATATGGCTCATCCTCAGGTTTAAATTATCCACCTCCTTGCTTTTCCTGTAATGACAGC
ATTCTTCAGCCAACAGTTTTATCCAACTGGAGTCAATCGATATGA

Peptide Sequence

PEP ID

XP_016454253.1
PEP Infomation

PREDICTED: probable polygalacturonase At1g80170 [Nicotiana tabacum]
Sequence

MGKMRSSSISYFNFSSYSTSVALFASLYSIYFVLISANVNGFDSVIQLPTSASVRNTTRK
SETLFDVGDFGAIGDGITDDTNSFKDAWDKACSSASRSKIVIPGGYSFLVRPLNFAGPCR
SKVSLRIAGTILAPKDLEVWDGLNPRKWLYFRSMKHLTIEGGGTINGMGQEWWARSCKVN
KTNPCQHAPTALTFHRCNNLKVRNIEILNSQQMHLAFTDCKHVAVSHLAVLAPADSPNTD
GIHISSSTQINIKDCTIGTGDDCISIVGNSSRIKVRNIVCGPGHGISIGSLGKSNSMSQV
YNVHVNGASISNTENGVRIKTWQGGTGFVRKITFESVWMENVSNPIIIDQYYCDSLLPCS
NKTSNIRIDSISFVGIKGTSATEKAITVACSDSCPCRKLYLEDVQLTSFSGDPITSFCWE
AYGSSSGLNYPPPCFSCNDSILQPTVLSNWSQSI

Transcript Sequence

Gene sequence data has not been registered.